NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0308412_1002592

Scaffold Ga0308412_1002592


Overview

Basic Information
Taxon OID3300031513 Open in IMG/M
Scaffold IDGa0308412_1002592 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9734
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022604Metagenome / Metatranscriptome213N
F025421Metagenome / Metatranscriptome201Y
F028964Metagenome / Metatranscriptome190N
F038570Metagenome / Metatranscriptome165N
F042758Metagenome / Metatranscriptome157N
F059420Metagenome134Y
F093039Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0308412_10025921F042758AGGAGGMKPTDFLNIAGRLPAQAITGATETTSVDMQLLRGVAAVCIVGTATTPPSFAIQSSADNATFTNLAGKSVTSIPANSEAVINIRDEDLPDGHRWIRAVVNGNATVAVVFIGTSARDNPPAKLTTTTIVS
Ga0308412_100259210F028964AGGMIGAEVTLALSSLSGWGNRTGAVALSGSFERRAMDVATCELEISLSASSYNLSAYGDVLMVMLPDRREYYFITAIERRNTYYVVRGETFLRYLRDYYPDRYAGTADAQWTGDAARGVLISLRPTESVPMHGGGAGLRERLIVVPDNVAPSVNVSTSFAWASRLESAKEITRLAHAKGFPLVWWFECGRWSDTKNAVGAYRIEPSVSLVFAHSLQRFGVPHLRWNKTIRFEAWAYDRSQPTAGVALGYGLGVDRDVARAWSPRGLFGVFTYWEDRIDGRATGSSEAAQAALMRWRPVEAGAGQVFADETPRLGDQVFMVAADNQQCAGIAYVVGERYTVAGAQVDSMELGVMQI
Ga0308412_10025923F022604GAGGMLSAVNAVYAVVAAVPGIVAAYTTVPMSVTTAALPMALVTPVGENRRQHAHELVRIETLVRVRIVHSPIAQGVTEAQQSALYTLADAVMTALTDDITLGGQVDHVASVDADEPAIYTLAGTDYLSVSIAVRVVEKI
Ga0308412_10025925F038570AGGAGMPATHLRRVQLGQQTAFATPVAATSILRGVKDGSVTINHNDAVVEELGRSVSDLIVFSQRHAEGELELQCTYEDILYGLFGLFGPVAPSGGARTFNAPVVVYNAPQIYTIEYGAPGAEYRVIGGIIREWTLRYEANAGVTESWAFIGREVQANSLTDSLPTRIVTPVLSRHASWYVDPVGTAHGRTPIPGTVIEAELSINTNRHLKMFEGPQPLDWGEGRWEAQLSITAEFNETAEDLVDALLTDRVARNIRVNFVETAGSRELRIDFVGLIAESPELFGDRDGNMTVEVTFKALVAAPLNNWLQIRTINGVGTLP
Ga0308412_10025926F025421GGAMIDLTKVRRIDRNAPGSFMEYARLQATIAEGDLMAIARALEAYGVDVQALSFNELVEVVKHIAGESAPLPVTSATE
Ga0308412_10025927F093039GAGVTLLLHLAETWGVAPWVLERELSLFWAEAACEYEREKVRRMKREIRRYGGR
Ga0308412_10025929F059420AGGAGMEVELFRGISTLTTLHYRNVAGQYSWVLRDFQGDLINEVEVLTRDALGGRTLVVGQQERARRIVVVLDVQGTSMPNLHAAIRELETHTRWRRNRPPGVLVLRVRAQSTDPWTLQGVVLEQMSVQFEDDQYRANITLRFACLNIYWREEISVVSSSNSTLTGNAFVVNLSTMTFTPITGITEPITNIEYRSLSNEWIIFTDTQVWRAPITGGAATLIGSLTGSTFLRGCVTHDENILAVAHGANQLVRFAYPSSSPTVLGSFNGIPTRVRRFGDQYIVVGEFSQYRTTGGLAGMVVVNINGDILNTFSPFPTSVIFPNGGRIRDVLYKDNVRVAVAHRQTSPQRSWLVVWSEQVSPYFVAEGESIWAPSEIDQSSEIDNVIIGAESPVHAGRLFGTLCRLRNLSGVVPYAYPAISVGAVQIGCAAERIFPLTSEPRKVFRLGDDGTVMPLFASNANCLAVRRNNNLMCIGFRDVATLWTPVSVNVSTVPNTGTTAEIVPKLGSLSVPVFSCYSKADSEILGEVIDPHTQASSYEPKYHSGGSVTPLPGTRYKRMFRGSSNENVNRYWFAVGGSVSAVNVEINRYKHDWR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.