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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031513 Open in IMG/M |
| Scaffold ID | Ga0308412_1002673 Open in IMG/M |
| Source Dataset Name | Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9570 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (83.33%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming | |||||||
| Coordinates | Lat. (o) | 44.5341 | Long. (o) | -110.798 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004307 | Metagenome / Metatranscriptome | 444 | Y |
| F006252 | Metagenome / Metatranscriptome | 377 | Y |
| F007404 | Metagenome / Metatranscriptome | 351 | Y |
| F014738 | Metagenome / Metatranscriptome | 260 | Y |
| F016100 | Metagenome / Metatranscriptome | 249 | Y |
| F081391 | Metagenome / Metatranscriptome | 114 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0308412_100267311 | F004307 | AGGA | MFKELINHNGNGRERPELNGAYTAIFRGVSQRQRPTFETRNDPEPTFEDVFVFEFEVVDADFDEPIRVSKWVRKPKRLTHPNGGKVTNLYKTLAALYGVVQMSDAQLENAEEFVEKEAIGRQYQLTLETKPSGWVEIVHIAPVRARLRKTKEDEVPF |
| Ga0308412_100267312 | F081391 | GGA | MKSRSKNEPRWKRKERDALRALQAVFGRVSDPSLARLLTSTGRVGHLTRFGVDGFVGDNPGFAVEVKARRKML |
| Ga0308412_10026732 | F007404 | GGAGG | VDIIEILQLLAAGHNGLTTLDYAWNALFGAIGAATAYLADNEGEVILPRYDAEQHSIELGALGRVLVGAGAGTLVGYSGYVPFIAGVVAPTLLPILIDKVTAFVGRGRK |
| Ga0308412_10026733 | F014738 | N/A | MKLDVLLLISAFALAFVHPDAAQVAATAVLVLLVTRIERGRRARKKKSAPVVH |
| Ga0308412_10026736 | F016100 | AGGAGG | MVVSIKIERFKEYSELVRVLSRSEACPATNKDRIVPLNHELLIGSHLPEPDWHRLGALVVALFRSFAVVDVEIWQTNAGTWVADALVDFGDRRRLRKGGGDTPLQAMIELVYDIQRY |
| Ga0308412_10026738 | F006252 | AGGGGG | VRSFDEQAAFGLPYERLIAQTAALLLYPHRLDLTLMRLDAYAPLDYLLLDGDCPIAALEVKRRSVRSDTYRTTILPQSVVDAARRLTIPVYAAILFIDGLAVFDVLRTPSTARWLRTRRGALRKHREYDVRERMVRLEEVHQPPRRSA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |