NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308412_1007201

Scaffold Ga0308412_1007201


Overview

Basic Information
Taxon OID3300031513 Open in IMG/M
Scaffold IDGa0308412_1007201 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5516
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013092Metagenome / Metatranscriptome274N
F022362Metagenome / Metatranscriptome214N
F070715Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0308412_10072011F070715GAGGMRHRFTDEHGREYEVARISFARYHDLRDHGFDLAKWASEALARVVRPDTTTDSVQSQRFDYEEFVRILADGAVFRDRKTAEALLTVLCRESLARHGVTANEVFESLYGRSIWEAEVAFISRILDFFEGHPIMREILGAALKLLLSKVEQASVPTSSPTSGT
Ga0308412_10072014F022362GGAMIANLLDAVVDALNGPPPAASVAASKTWAHYWVLARETPDVCVVTFVRSERERLSRSRFRFLLDVEIVRARPYVDASSIETVVNDVYSIASRLTSQEVLERGGIAYAFESISFSDPLYEIEEVFDESSFVRASVTARYAVLEPL
Ga0308412_10072016F013092GAGMNAILDDFFETLLRSRGVRLRLPNGSEIDAVVARRDSQSVFLGGQVAADTTTQCFVVRASDLPPGYWPRVADEIVNVATSQRYIVVRATGGAHATTSSDPYGFLVRVWTRLAS
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