NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308412_1007822

Scaffold Ga0308412_1007822


Overview

Basic Information
Taxon OID3300031513 Open in IMG/M
Scaffold IDGa0308412_1007822 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5261
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037460Metagenome / Metatranscriptome168N
F052924Metagenome142N
F052925Metagenome142Y
F069505Metagenome124N
F093910Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0308412_10078223F052924GGAGMAKAQYKTEEERELKQLSIGLSYLTSEIRDFTRWIRTAPDPAGKVQEYRARLDRIFDRIGQLRETDPNRVAAMERRINAARQDLDNTLQQAARGVEEPKSFFRRLYDGVTRVTITVLQTLGGVVGWIFRRRGGP
Ga0308412_10078224F069505AGGAGMQWCSELAYALRVAQRQCDEHVVRNALRAKFPAMPAEEIDGCADVACKAVTAARLLSKAETLDEAVQAFRSAPELDDLPQPGADIFAQVYSIFENEKSRLYYSRVFGDSLPGQSEDEKVVHAFLSFLEALATALECGVGG
Ga0308412_10078225F093910AGGAGGMDVRKFIRPRLWVSHEELLASPLEGWVVGVFEDTTYGDRRPRLVLEVAQDDGVRRRIPLNQASIENVATAWGYESKNWVRHRVRISIAHKNIQGKYVQVRMVTPITTVPPIAELPEDPNPPQEPDDAPF
Ga0308412_10078227F052925AGGAGMKENCFYYWKELYDLIEGFTPYEEDIRRLTAAERRQARTDTAWDAAWKVAYRATADHDKRYALASALLWLEEKGLYGGGCAFPGAGTKRLRFFRSLGKGRRKATDGPAWTEAIGWAARKHGWCEWDLAEDGLGIHFEPHPGETEALREFTLPLREVLFLDGDESADAVEAWVGACKHAVREFGRPRSYGVEARTQDLFLTAVQEYTAAKEALSRTRALEAVPRSAAEEAQDARNS
Ga0308412_10078228F037460AGGAGGMPEIADGIAFFDAAVRLLRKGWPPMPPLITGYSNYIRYGSVYWHCENGPLVLRWAEKIRQRQDWFAYAEPLLAYFFPGHPFRRPEWRPPEGITEGENPSNSVGWPAKALVLEWKRAARKRQPLWHPAHYVVYYRFFDNRVPEWNAFYLFLTVFLRRELEALQAARPAEWLLLDGPAPIDSLSPAPHFSLAPGLQASWQDWLRAVKPIAKRYHFKRHKCLLA
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