NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308412_1007942

Scaffold Ga0308412_1007942


Overview

Basic Information
Taxon OID3300031513 Open in IMG/M
Scaffold IDGa0308412_1007942 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5219
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002229Metagenome / Metatranscriptome580Y
F002372Metagenome / Metatranscriptome566Y
F002795Metagenome / Metatranscriptome529Y
F004024Metagenome / Metatranscriptome456N
F015735Metagenome / Metatranscriptome252Y

Sequences

Protein IDFamilyRBSSequence
Ga0308412_100794211F004024AGGAMPSERDYLRQPSLNDDDMMFLDARATLAAALSRAVVGYSDSRVRALAWLSIATPRLYDRIAPIIESSAIRQSPGASRTLRDALRALSLEEYVRRRDERRER
Ga0308412_10079426F015735AGGCGGMVYHHWSVEWHPRDDPPHGLPRVVCVARRAVSDPRSGPGPFPPDIDRAARFWNLIASGGVADHGAGCEVAWRVAVVADSDCDAPPDGVWSDDTVYRARRRLLRWIMRSQCPIPALADHFAVEHFWDHPEYFGLLEPGA
Ga0308412_10079427F002372AGGGGGMPTRREDRLWSVVHQRSAHLRALLDSLDDIDVGVTYDLDYYPYAIVELLRVREDAPPLVLRSVYIQANRQWEYHSEFVLRVVGAALQLVHEYRADPSMGGAEAVWA
Ga0308412_10079428F002795AGGAGGMPVTSGLVLRGMIAAYREFISRKDGKTYRIVTVYGDLVAGEDVLCQIDGYDVFVASPDYSRGEMVSFPARLQFVRDGSGKPVVRLYVDEGVR
Ga0308412_10079429F002229GGAGGMVTLLTLDGVEEIDYVPSDAEIRVSLDDAGLYGMVLGGVTWMRLVSGAGWWTVLFGRRLVVTLASVGWCWVMDGLGNRGYWSPALSSVIADVCAMYGAHIED
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