NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308412_1008017

Scaffold Ga0308412_1008017


Overview

Basic Information
Taxon OID3300031513 Open in IMG/M
Scaffold IDGa0308412_1008017 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5191
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021427Metagenome / Metatranscriptome219Y
F028057Metagenome192N
F056129Metagenome138Y
F056953Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0308412_10080172F021427N/AMSESTDLPLFVDESFGITVDPGAWRSHGLWHALCNYLDLLDSRYAKIARIMVDNILAIMRADFMCDAKESRLQRDVFDYRQRILRKYAPMVHRPESFIV
Ga0308412_10080177F028057N/AMNKLNTNQKRRLARAISRAASAELAARQAQLRLIRAERRVVAEEFESLRRIVMILSLPLLFLLCAIFSSFWFILIAEAIVKSAK
Ga0308412_10080178F056129AGGAGGMYNGWTNHMTWSMSLYCESLEDVRALREYLEEIAASLPLPASDLLESAMAEVNWRELERAYSPADTD
Ga0308412_10080179F056953AGGAGMSKEEQAMYSAFKFNNAKVDLVFAFTHKPSDSTGQVEIAFLRHLLSTAAQRGQVTPDDVYRAVESSGAFDLDLDEGGKDKIVADLWQIGDNYIGALSRQQAQELRKLRHLCLRANNGDLDAMMTIADMI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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