NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308412_1008270

Scaffold Ga0308412_1008270


Overview

Basic Information
Taxon OID3300031513 Open in IMG/M
Scaffold IDGa0308412_1008270 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5093
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013092Metagenome / Metatranscriptome274N
F022362Metagenome / Metatranscriptome214N
F070715Metagenome / Metatranscriptome122N
F097406Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0308412_10082702F013092GAGMNAILDDFFKTLLRSRGVRLRLPNGSEIDAVVARRDSQSVSLGGQVAADTTTQCFVVRASDLPPGYWPRVADEIINVATSQRYIVVRAIGGAHATTSSDPYGFLVRVWTRLAS
Ga0308412_10082704F022362GGAMIANLLDAVVDALNGPPPAASVAASKTWAHYWVLARETPDVCVVTFVRSERERLSRSRFRFLLEVEIVRARPYVDASSIEIVVNDVHSIASRITSQEVLERGGIAYAFESISFSDPLYEIEEVFDESSFVRASITARYAVLESL
Ga0308412_10082707F070715GAGGMMRHRFTDEQGREYEVARISFARYHDLRDHGFDLAKWASEALARVVRPDTTNDNALSQRFDYEEFVRILADGAVFRDRKTAEALLTVLCRDSLSRYGVTANEVFESLYGRSIWEAEVAFISRILDFFEGHPIMREILGAALKLLLSKVEQASVPTSSPTSGTSPATSA
Ga0308412_10082708F097406N/AMYESRLFHDHCHYGIIAAAIANAFRSSESSTIRVEDIFPDVVEYLERFGVRGDNELPLLSKDDLKLWLAQQKSERVARASS
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