NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308412_1008788

Scaffold Ga0308412_1008788


Overview

Basic Information
Taxon OID3300031513 Open in IMG/M
Scaffold IDGa0308412_1008788 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4900
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041787Metagenome / Metatranscriptome159N
F062336Metagenome / Metatranscriptome130N
F066335Metagenome / Metatranscriptome126N
F079733Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0308412_10087882F079733AGGAGGMRDIIICDKGKVTFANPDVWHLQNDNWFSEPRSAAQWREDCENELQRLCQSHHWIDVWSLPGDISLPYDKRITRVGQWCISRIDETCDDGRGVRQLVIFTYSDGRIILETPTYMRGEDDRLIKLVPGMKEYDDSWGFDDKGWLFHLEDVPRIWNDLYQRRLINEVASELLSLSMTLNWQGGMARLIIRLVNAGNYDDAMQVAACASARFEHEEWPEDNLFAVVHRKMIRVLATNEL
Ga0308412_10087883F062336GAGGMSTIDFSIYKATEPVLTFVRCTWINPHPTKSGTPVEHGGIIWDAAEPVECSSKPFSVTYSSGKTQEVCGGRGFVVIPIRMSNQYTIVTSSDPAMLQQVIVPQPLYMRSDNVPSEFRVSSALTFFFVLRDDPSNTLMSVQLRSHGATLLNRAYFDWVKTVAKLGNQLLRIPLDVRALPAKFGAGETVMVGRGQKSPIATPIFRALRQYKTADELQSDLVPPERFKALLEMADDDMIKQYPAIPAVKIAPTLDEAYAALGAALKDEQQPKALPAEVKLARKVIDEGDYF
Ga0308412_10087885F041787GGAGGMSCVNCQCDQPCCFDYCDTRYLLPYCGDPCCVPVALVPNAKLMQGSPLTRTADGRYTLFDPTATPPQRFAGILSRDWQTDDNGNGIFRNCYPNCNMVEVCMYVNGVFRLRDMTITTDQLNAIVAQGRGYVHGDPNTLSGILQLF
Ga0308412_10087886F066335GGAGGMPQVVDNCILRTSFEFIQLARELLQTTPENMLGLQIMPDDNREHDEYVLLKPRPFAGRVNWRGLNQNARPTRTPFAYEQNACIITPGYWAEFQEIDEQMIRKVAQRGTHSARFDLTEYERELMMDISMKLHQTKESQIWQALVNGYVEERNDEGIAVWSQRYKIIRARFGISACDRQNSTPLADLACIARQVVGVSGAMFDTSAKMYANSRTWECLLRNTNPLDIGRMSLSACCDAVGMARLAQFFAARNLPQPVVYDGFWLDEQKRPNFYIPTGKIVMVGRRPDNQTIGAYFQPPVLIQCGNDTTGAHGTFVVRQDNACPDSRMPWQGRR
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