NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0308412_1009195

Scaffold Ga0308412_1009195


Overview

Basic Information
Taxon OID3300031513 Open in IMG/M
Scaffold IDGa0308412_1009195 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4763
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002982Metagenome / Metatranscriptome515Y
F006418Metagenome / Metatranscriptome373Y
F007976Metagenome / Metatranscriptome341Y
F043176Metagenome / Metatranscriptome156Y
F048124Metagenome / Metatranscriptome148Y
F075805Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0308412_100919510F043176AGGAGGMLQTYKIWEGERTFLPGDDTGKFTIIEITGEELGWFEDVIDGKTYYVYQTSEGEVVINIVEQTYGIGEPSRAVIYRFSSLFEAAQSEQRYALEELRLI
Ga0308412_100919511F006418AGGAGMPKRRSTPAPRPAREIVIDSGDDFKIIFDRETRDFAVEYRGQPVGWRALVEDARRLVEQLRY
Ga0308412_10091953F048124AGGAGGMARISIWRGYRDWNAGSDYEIVTYEDARELGAVRFEDEEADIQYRIIQWDEGIVVFFVERRGHYCEAEIFEYPDLETAAEQYWFVLKKAGVIQ
Ga0308412_10091955F075805AGGAGGMRVNVWHGWRGVHGNRDVSQFVWIEFDGEPLGSLVVEIDEDRTDERAFYRLYDGRLVVAEHRYGDWKKGGVDYGVVSVYADLDDAARRGWRDDLVRIGAYDAPTRELDEWLSQYEEEE
Ga0308412_10091956F002982GAGGMKIAFERTPTAICAVLYKPGECDRIITVARPSDAIDALALGINAAAFTPLDALFSLPRVVLVEIERREGGWRVEVAYWHKGLGTLAQYEEDAATLSEALARCVWALAR
Ga0308412_10091958F007976AGGAGGMPSTELSNFLRVTLDVQAPPFSGIHVADGVAAATDGVMLVAKKFDDKVFLRGEGAISPKAARVLEALAEGTWIGSIAVVGNRVTATARSTRYDEKAGGEVAGEYCEVKLPEFYCPRVPIARMLAVLTDESRGWRQIVENPRIKNVKEWSVKEFVALMNNPREGYELFRAKADNDTHWYSVAQLRKGLRLFGKNSRLSVRRSNNGWLSFSDQWGYTFAVTPFVKRD
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.