NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308412_1010182

Scaffold Ga0308412_1010182


Overview

Basic Information
Taxon OID3300031513 Open in IMG/M
Scaffold IDGa0308412_1010182 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4479
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054644Metagenome / Metatranscriptome139Y
F061874Metagenome / Metatranscriptome131N

Sequences

Protein IDFamilyRBSSequence
Ga0308412_10101826F061874AGGVEKCARLNINSLDMTASKNVGQSPKRSETPLWRRKANYVLRELVRMWHGQPYDSAVMWGLRYAFEDILHTFAKEHDLPIPKLFFWFERFWEKYSGYLGERVFTALDRSKLMDILLRGFPLSQAELCKSFFYDQSVYGIMHLYSVLFLWEVGRGNRVLCYKREKWPLGYYESLPVAPLDSFTIWYVKRAYGGLTET
Ga0308412_10101827F054644N/AMYYTIESEDLRERWLFRQYRAACMAALELAQRTPHEVRVVRLATPAGLGRQIMCVYNCKYEVSSSPPPIQVEEDEEEGKRRYRRKRKK
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