NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308412_1013760

Scaffold Ga0308412_1013760


Overview

Basic Information
Taxon OID3300031513 Open in IMG/M
Scaffold IDGa0308412_1013760 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3665
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y
F066811Metagenome / Metatranscriptome126N

Sequences

Protein IDFamilyRBSSequence
Ga0308412_10137601F066811AGGAGGMQFNNPPTFTAPSMTDILNAATSIFNPFVGVLALAIGVTLGARMLGRIVNLF
Ga0308412_10137603F000855GAGGMDWLEDFLSKIVSWFDELSAGVHNGIIGWLNSLVDIWNGWMDALLHPAQAMPSVPALRWIVDWLGGIADYTRLMYMLVDYVAYASIVQQALLAQLAIVTVGLAFRAWLVIRRVVLVS
Ga0308412_10137604F001381GAGMHYVVATLYVLCWLSLAAAAALWLPRWALPAALVQLAVAYVMLRSWLTAAGGDDGA
Ga0308412_10137605F000642GAGGVQEISIALALCAVGAAVWYMRRREASGRVHGWLVLYDDLGGWRVLPAVYGDAGIVADGVTYPASLPALRAGRELVWIARCDAAALIEHQALERARESAALASLWRGGGQWLDLLRVLGVVLPAAFAYFTWAQVSALQALVAQILALVGER
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