NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308412_1015340

Scaffold Ga0308412_1015340


Overview

Basic Information
Taxon OID3300031513 Open in IMG/M
Scaffold IDGa0308412_1015340 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3395
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y
F002978Metagenome / Metatranscriptome516Y

Sequences

Protein IDFamilyRBSSequence
Ga0308412_10153402F002978AGGVSVRDWRVTIVPWADRRLWFIQARRGRRVVWGVVYDASDPDSVSLARRAVATLRAAGADCSALPSPLPGAPGAPGA
Ga0308412_10153403F000642GAGGVQEVSIALAICAVGAAVWYMRRREASGRVHGWLVLYDDLGGWRALPAVYADSGIVADGVTYPASLPVVRVDRTLVWIARCDAAALIEHQALERARESAALASLWRGGGQWIDLLRVLGAVLPAVFAYFTWAQVASLQGLVAQILALVGDK
Ga0308412_10153404F001381GAGMQYVVATLYVLLWLALAAAAALWLPLWALPAALVQLAVAYVMLRAVWLTVARDD
Ga0308412_10153405F000855AGGAGMDWLEDFFSKVVSWLDERTANIYNGIVAFINSLVEIWNGWMDALLHPAQAMPSVPALRWIVDWLGGIVDYTRLMYMLVDYVAYASIVQQALAAQLTIVTIGLAFRAWLVIRRIVLVS
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