NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0308412_1017755

Scaffold Ga0308412_1017755


Overview

Basic Information
Taxon OID3300031513 Open in IMG/M
Scaffold IDGa0308412_1017755 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3060
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006418Metagenome / Metatranscriptome373Y
F010840Metagenome / Metatranscriptome298Y
F016404Metagenome / Metatranscriptome247N

Sequences

Protein IDFamilyRBSSequence
Ga0308412_10177552F016404N/AMTVDELLTDEARAAVLRALLMIVLAEDVPASARVAAARLFLSQFDEQPNAERDVLVIVDEAAFVKTV
Ga0308412_10177553F010840AGGAGGMNLPFSQPLDKITFGALAAATVVILAWALREFVGIELPAEVQAALAVIFGYVVSYHIPLTEAEAEAIARKYYKHK
Ga0308412_10177555F006418AGGAGMPKRRSASKPRPAREVVIEEGADYRLLYDRETRDYAVEFKGAPVGWRASESEARRLVETLRYEDAKRA
Ga0308412_10177556F010840AGGAGGVNLPFSQPLDKVTYGALAAATVIILAWALREFAGIELPAEVQSALAVIFGYVVSYHIPLSEVEAEAIARKYYRNYK
Ga0308412_10177557F016404N/AMTIDELLTDEARATVLRALFMIVVNDNEPASARVAAARLFLSQFKEHPNAERDVLVIVDEAAFVKTV
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.