NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308412_1019678

Scaffold Ga0308412_1019678


Overview

Basic Information
Taxon OID3300031513 Open in IMG/M
Scaffold IDGa0308412_1019678 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2845
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002229Metagenome / Metatranscriptome580Y
F002372Metagenome / Metatranscriptome566Y
F002795Metagenome / Metatranscriptome529Y
F002978Metagenome / Metatranscriptome516Y
F004024Metagenome / Metatranscriptome456N
F031513Metagenome / Metatranscriptome182N

Sequences

Protein IDFamilyRBSSequence
Ga0308412_10196781F031513N/AGDSGIVADGVTYPASLPALRAGRELVWIARCESAALIEHQALERARESAALASLWRGGGQWLDFLRVAGVVLPAAFAYFTWAQVSALQSLVAQILALVGDK
Ga0308412_10196782F002978GGTGGVSSVRDWRVTVVPWADRRLWFLQARRGRRVVWGVVYDADDPDSVSLARRAVATLRAAGADCSALPHPLPGAPGA
Ga0308412_10196783F004024AGGAMPSERDYLRQLSSLSDDDMMFLDARATLASALSRAVVGYSDGRVRALAWLAIATPRLYDRIAPIIESAAIRQSPGASRTLRDALRALSLEEYMRRRDERRDGR
Ga0308412_10196785F002229GGAGGMVTLLALDGVEEIDYTPSDAEIRVSLDDRALYGMVLGVVTWIRLASGAGWWTVLCNRRVTVTMVAIGWCWVADGLGARGYWSPVLACVPAEVRALCGGCVEDEEH
Ga0308412_10196786F002795AGGAGMPITTGLVLRGMIAAYREFVSRKDGKVYRIVTVYGDLVAGEDVLCQVDGYDVFVDSPGYARGEMVAFPARLQFIRDASGRPAVRLYVDEGVR
Ga0308412_10196787F002372AGGGGGMPTRREDRLWSVVHQRSAHLRALLDGLDSIDVGVTYELDYYPYVVVELLRVREDAPPLVLRSVYIQANRQWEYHSEFALRVIDAALHL
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