NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308412_1023545

Scaffold Ga0308412_1023545


Overview

Basic Information
Taxon OID3300031513 Open in IMG/M
Scaffold IDGa0308412_1023545 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2507
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002372Metagenome / Metatranscriptome566Y
F002795Metagenome / Metatranscriptome529Y
F004024Metagenome / Metatranscriptome456N
F008135Metagenome / Metatranscriptome338Y

Sequences

Protein IDFamilyRBSSequence
Ga0308412_10235451F002372GAGGMPTRREDALWSVVHRRASHLRALLDALDDVDMSIAYELHYYPYAIVELLRVRDDASPIVLRSAYVSANRQWERHSEFTLRVVEAALQLVQEYRADPSAGGSDSWV
Ga0308412_10235452F002795GGAGGMATNSGLVLRGMVAAYREFVSRKDGRLFRVVTVFGDLMVGEVVLCAVDGYDVFVDTPGYARGEMVELPARLQFLRDGSGRPVIKLYVDER
Ga0308412_10235453F008135N/AMRAMNDPRTERLLVSAGTSVARVLDDRQRHAVALALEVCWYIVAALPPDDELTFGDVVRLLRWFVTGFREADDGDE
Ga0308412_10235456F004024AGGAMHSERDYLRQPSLSDDDMMFLDARATLAAALSRAVVGYSDGRVRALAWLSIATPRLYDRIAPVVESSAIRQSPGASRTLRDALRALSLEEYVRRRDERRSDR
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Institute for Fundamental Biomedical Research
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