Basic Information | |
---|---|
Taxon OID | 3300031513 Open in IMG/M |
Scaffold ID | Ga0308412_1026305 Open in IMG/M |
Source Dataset Name | Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 2316 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Wyoming | |||||||
Coordinates | Lat. (o) | 44.5341 | Long. (o) | -110.798 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F007033 | Metagenome / Metatranscriptome | 359 | Y |
F024322 | Metagenome / Metatranscriptome | 206 | N |
F044249 | Metagenome / Metatranscriptome | 154 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0308412_10263052 | F007033 | AGGA | MQCRCGAPLWALGIPDCHPVLRPIRRIAFERVLEPSGTPTDFDLINSTVYPNARRLMTPILYNVESERPEAVFEELSGTKFFVRHQPRTFKALVANPPAEWGINIEQLRCVSRLGVFLIDDARVVWGKRVSPLAAAPIPIEPGTVQARLLFPSDATITKYEFSFDFAQSLMDFELVPVFADAGLLNHVPGIAARLDPSWNAPTLSVGVYALYARGAGDLFIPISGLAAFLELRNNANTLIATNFTEITPGSYVDNAVSLPASGNPYTIRVGSSAPAGAFDYTTAVAQFSV |
Ga0308412_10263053 | F024322 | N/A | MSLLRKLRNARQWRYLRLVDPVLQQFEFCPVWANYLTPPSPVQVDTSVGTLTIQTGLVRSFAREYDVSTYAFPFSAEERVAFHPPPIFVAHYNEFSQIAARQKDAFLAVIPDARIGKSEWGEVEHEAFFFAPAQDTEEFEVQLERIAGVRESLLELWPKMVSITEIVPKFSRRAEWGTGEKLVKGEWIAIRLTINLKDYELNAV |
Ga0308412_10263054 | F044249 | GGCGG | MTKRDGLLALLGASLTIVAKKYVAVLTALIVLGSLVNFLGWVHAIISGEGFKAVKVLQGTARLVFYMVFYLALLVGLEQVASYLIPPLLSVSIIYEASLALKKAVQLNIIPAGLVRQLTKVFRHEPPKKAP |
⦗Top⦘ |