NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308412_1030323

Scaffold Ga0308412_1030323


Overview

Basic Information
Taxon OID3300031513 Open in IMG/M
Scaffold IDGa0308412_1030323 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2092
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006418Metagenome / Metatranscriptome373Y
F010840Metagenome / Metatranscriptome298Y
F016404Metagenome / Metatranscriptome247N
F043176Metagenome / Metatranscriptome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0308412_10303231F043176AGGAGGMQTYRIWEGERTFLPGDDTGKYKVFEITGEELGWFEDVIDGKTYYVYQTSEGEVVINIVEQSYGIGEPSRAVIFRFRSLEEAAQSEQRYALSELRLI
Ga0308412_10303232F006418AGGAGMPKRRSASKPQPAREIIIAEGEDYRILYDRETRDYAVEYRGEPVGWRATEYEARRLVEALRYEDARCGE
Ga0308412_10303235F010840N/AMNLPFSQPLDKVTFGALAAATVIILTWALREFVGIDLPSEVQAALAVIFGYVVSYHIPLTEAEAEAIARKYYKHK
Ga0308412_10303236F016404N/AMTVDELLTDEARAAVLRALLMIVLNESDPASARVAAARLFLSQFDEQPNAERDVLVIVDETAFVKTV
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