NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308412_1037117

Scaffold Ga0308412_1037117


Overview

Basic Information
Taxon OID3300031513 Open in IMG/M
Scaffold IDGa0308412_1037117 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1803
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005028Metagenome / Metatranscriptome414Y
F008499Metagenome / Metatranscriptome332Y
F085751Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0308412_10371171F085751AGGGGGMTDLIAWIIAGGVIFALVNSNVADGLLSALDLSDNLKRAADWASGVRGVPAGVAAVCFFAMAYVFGALAYRYDLVPTWRFMQPIANDVLATGAEWLTLFVVFLTLLPTLI
Ga0308412_10371174F005028GGAMRDDDLRAAMSFFAERLRDADIDETRLLRWTRHKLRNDAQAVAELMLTVGYLPTFIRYFLRYHITHVDPETDGEDVTLAVADLRAAAKRLRQPYRDLAAVCLRWGYVHETVVQMLARALERK
Ga0308412_10371175F008499AGGAGLTTFRSKSEPRWKRKERSVLKALQATFGRVGDPSLARLLTSTGRVGHLTRFGVDGFVGNNPGFAVEVKARKHMLTKPTLDALLQTIDRAARFECIPLFVLVFGDDVPTRTENGARVDREWVMMPRRVLDELVGKNKGDGDA
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