NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0308412_1038971

Scaffold Ga0308412_1038971


Overview

Basic Information
Taxon OID3300031513 Open in IMG/M
Scaffold IDGa0308412_1038971 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1740
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y
F002978Metagenome / Metatranscriptome516Y
F011940Metagenome / Metatranscriptome285Y

Sequences

Protein IDFamilyRBSSequence
Ga0308412_10389711F011940N/ALVGDLFDGLEALQRAVAPPASRICDLPVPVLADAPEQHFRDALPDFVAGLCNFFGIASPVLGFVRFPVTLMVVGFAFWTAWRVFRSLS
Ga0308412_10389712F000855GAGGVEWLEDFFSKIVSWVDELSASIHNGIIGWVNSLIDIWNGWMDALLHPAQAMPSVPQLRWVVDWLGDIADYTRLMYMLVDYVAYASIVQQALTAQIGIVIVGLGFRAWLVIRRIVLVS
Ga0308412_10389713F001381GAGMQYVIATLYVLLWLALAALAALWLPRWALPAALVQLAVAYVMLRSWLTAAAGDD
Ga0308412_10389714F000642GGAGMQEISVALALCAVAAAVWYMRRRDAGAGRVRGWLLLYDDLGGWRVLPASYGDAGIVADGVTYPASLPALRVGRELIWIARCDAAALIEHQALERARESAALASLWKGGGQWIDFLRIVGVVLPAAFAYATWAQVASLQSLVAQILALVDK
Ga0308412_10389715F002978GAGMRDWRVMLVPWADRRLWFVQARRGRRVVWGVVYDASDPDSVSLARRAVATLRAAGADCSALPAVLPGAPGAPGA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.