NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308412_1045093

Scaffold Ga0308412_1045093


Overview

Basic Information
Taxon OID3300031513 Open in IMG/M
Scaffold IDGa0308412_1045093 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1564
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002982Metagenome / Metatranscriptome515Y
F031016Metagenome / Metatranscriptome183Y
F075805Metagenome / Metatranscriptome118Y
F087842Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0308412_10450931F087842GGCGGVWAGYVSDADARVYLVEFDGARIGGVSERNARRTFYATADGRVVVHEVRTGRRRGGRVYDQALVYVFDNLAVACAHLDVSLQRIVSECGEATLPRVEAPTLTLDEWARGAGTY
Ga0308412_10450932F002982GAGGMKLQFERLPGAICAVLVAPGECDRIANVARASDAFDALALDVDAGAFAPLNALFVFARVVCVELERRGDGWRAEVVYWSGGLGTLAQYETDAATLTDALTRCVRALLG
Ga0308412_10450933F075805AGGAGGMATVRVWQGFRGFKGNWDVSRFVWIEFDGELIGSLTYEIDEDREDECSFYRLKDGRIVVAEHRYGDWNKNGFDYGVVSVYSSVEDAAKRGWVEHLVRIGAYDAPVLDLDEWLRQYEVDE
Ga0308412_10450934F031016AGGAGGMTAITIWEGERRVVCGNEYEFVKYVEFEGAELGSSWEEENSRGTHTTFYRTADGRVVVHVIRWSRWENEATYAYIHVFPSLIGVNGAAAMFWWEMERAGLIPPRTTSLDE
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