NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308412_1063426

Scaffold Ga0308412_1063426


Overview

Basic Information
Taxon OID3300031513 Open in IMG/M
Scaffold IDGa0308412_1063426 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1216
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005028Metagenome / Metatranscriptome414Y
F076715Metagenome / Metatranscriptome117N
F085751Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0308412_10634261F085751GGTGGMSDVIAWIIAGGVIFALVNSNAADGLLSALDLSDNLKRAVDWARGVRGVPAGVASVCFFILAYVFGALAYRYDLVPTWRFIQPIAADVLATGAEWLTLFALFLTLLPTLIELATVGLVQRDIKALQWMVYFFIFFDIVTDFGEAVALVEVWRR
Ga0308412_10634262F076715AGGAMWWKIEEVPHQELEDWERALLRCENRAKRDPATRAAGVFVVFVREGETRPEYAPGDKAPEGAYPVGKWTLKKKGWMWYE
Ga0308412_10634263F005028AGGGGGMRDDDLRAAMSFFAARLRGAELDETRLLRWTRHKLRNDAQAVAALMLKVGYRPTYIRYFLRYHIPALNESAAVGETYTDPDAADAHLGLCWRLDEDVLTVLSDLHRAAKRLRQPYRDLAAVCLRWGYIHETVVRLLAKTLERKAKNVVED
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Institute for Fundamental Biomedical Research
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