NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308390_1000639

Scaffold Ga0308390_1000639


Overview

Basic Information
Taxon OID3300031514 Open in IMG/M
Scaffold IDGa0308390_1000639 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20040719_149
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24320
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (93.10%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013092Metagenome / Metatranscriptome274N
F022362Metagenome / Metatranscriptome214N
F096158Metagenome105N
F097406Metagenome / Metatranscriptome104N
F098168Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0308390_100063918F097406N/AMYESKLFHDHCHYGVIAAAIANAFRGSESSTIRVEDIFPDVVEYLERFGVRSDNELPLLTKDDLKSWLAQQKFEQVAQASS
Ga0308390_100063922F022362GGAMIANLLDAVVDALNGPPPAASVAASKAWAHYWVLARETPDVCVVTFVRSERERLSRSRFRFLLDVEIVRARPYVDASSIETVVNDVHSIASRITSEEVLERGGIAYAFDSISFSDPLYEIEEVFDESSFVRASITARYAVLESL
Ga0308390_100063924F013092GAGMNTILDDFFKTLLRSRGVRLRLPNGSEIDAVVARRDSQSVSFGGQVAADTTTQCFVVRASDLPSGYWPRVADEIVNVATSQRYIVVRATGGAHATTSSDPYGFLVRVWTRLAS
Ga0308390_10006395F096158GGAGGMSKASTYRFVIESTQFAKLERALSVALPAAKSLGVDAGIFWLRDSIFAATPYASIGIANFDLELEELPECIAISQVAARPLLFELRTHRVSYLEKIEFVVTRDQVIFTFEYDWRSREKTPPPLISRYSGSWRPRTTPREHYELLTAHRPYFECTLATRDIRKKLRGYEDYGYVVLEDFPDVISHVTVSRSLLLAFLEVAKDEDTTFRLAYYGDQRCVVCRAGDVIAILSAID
Ga0308390_10006399F098168AGGAGGMRARFQSDLVRDRLRAIRSIVREVVLERRIVFVEARDGKLSFSTRSGIAVGEVRFDADDEKIVIEEEGAAAFDANELLSSIDRAAGEVVEIASGPDRDYLRFAATEYAFPEVAYSDDDRVSFSSSESPIVRFAFELEGIFARTVFASKSSVQSKSRFVLYRSGDDAGGGLVVFSTDEKRYAIVRSRVDADAESKVLAYLDYDSAALAHSFLGATDERVEIGVGTNGWLVLAGESFSVSLATLSVPNNGYRFLDFDRKFRARVHRAATIPYESFARAYRSIEPVVSKEWRTIGFEFGESSVTLSATSDLGVSAKSRVDFESIVPANLRSTIYLDSKFVGDFLAAVRSVVSAEALESTKIVFEREEDSKGIVFFGLESDDWRYGMMPISRD
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