NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308390_1002213

Scaffold Ga0308390_1002213


Overview

Basic Information
Taxon OID3300031514 Open in IMG/M
Scaffold IDGa0308390_1002213 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20040719_149
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12007
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (93.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028051Metagenome / Metatranscriptome193Y
F037460Metagenome / Metatranscriptome168N
F052924Metagenome142N
F052925Metagenome142Y
F069505Metagenome124N

Sequences

Protein IDFamilyRBSSequence
Ga0308390_100221310F052924GAGGMAKAQYKTEEERELKQLSIGLSYLTDEIRLFARWLGTSPDPAGQAQGYRARLDRIFDRISQLRETDPNRVAAMERRIQTARQDLENALQQAARGIEEPKSFFRRLYDGIIRVTITVLQTLGGVVGWIFRRRGGP
Ga0308390_100221311F069505AGGAGMQWCSELAYALRVAQRQCDEHVVRNALRAKFPAMPAEEIEGCADVACKAVTAARLLSKAETLDEAVQAFRSAPELDDLPQSGADIFAQVYSIFENEKSRLFYSRVFGESLPGSSEDEKVVYAFLSFLEALAAALERGVGG
Ga0308390_100221314F052925AGGAGMKENCFYYWDELRKLIEGFTPYGDDIRRLTAAERRQARADTAWDAAWKAAYRATADHDKRYALASALLWLEERGLYGGGCAFPGAGTKRLRFFRSLGKGRRKASDGPAWTEAIGWAARKHGWCEWALTEDGLGVHFEPHPGETEALKEFTLTLREVLFLDGDESADAVEAWVGAAKHAIQEFGKPRPYGVGEQTKDIFLAAVQEYTAAKEALSRARALEAVPRPAAEEAEDAGNS
Ga0308390_100221315F037460AGGAGGMPEIADGLAFFDAAVRLLRKGWPPMPPLITGYANYIRYGSVYWHCENGPLVLRWAEKIRQRRDWYGYAEPLLAYFFPCHPFRRPEWRPPEGILDGENPSNAIGWPAKALVLEWRRAARKRQPLWHPTHYAVYYRHFDNRAREWNAFYLFLAVFLRQELRQLQAAKPAEWLLLDGPVPIDSLSPAPHFHLAPGLQASWQDWLRAVKPVARPYHFKRHKCLLA
Ga0308390_10022134F028051AGGAGGLDSSGRSGRWDIRAPNALTTERQQLTAAEVLRLIRGLPQQRPSQTSLARRYNVEFRTVVIDGPADRYVVLRADPRRFAFYLWGADFGPFYFSPYEFEATGSSPFSASPTTLLRITEESHPGLPRLEWKYLHSAGIAVRFYLIEVLDTAV
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