NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308390_1004572

Scaffold Ga0308390_1004572


Overview

Basic Information
Taxon OID3300031514 Open in IMG/M
Scaffold IDGa0308390_1004572 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20040719_149
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7153
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006252Metagenome / Metatranscriptome377Y
F019420Metagenome / Metatranscriptome229Y
F083527Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0308390_10045724F019420AGGAGGMAIYRDVTFWRGATDGDCEATVVRARLLEMVIELGEGEQPDKMTAWYEAEDGGIIVYEVECWEADGWMSARWRSVAE
Ga0308390_10045725F006252GGAGMRSFDEQAAFGLPYERLIAQAAALLLYPQRLDLALVRLDAYAPLDFLIVDGERPVAALEVKRRSVRSDTYPTTIIPQTVVDAAKRLTIPVFAAILFLDGLAVFDVLRTPSTARWLRTRRGVLRKHREYDIRERMVRIEEVHQLPRRSA
Ga0308390_10045727F083527GGAGGMSAFFGVKIQRQQPLVDAIRAAVAAKRRPVAARDRVYASEISACDRRITFALLGCEPDAPRSDSPSALLGDAIHAHLEALLMEAFPGRVETEVRVVSGAVSGRIDA
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