NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308390_1004738

Scaffold Ga0308390_1004738


Overview

Basic Information
Taxon OID3300031514 Open in IMG/M
Scaffold IDGa0308390_1004738 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20040719_149
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6964
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y
F002229Metagenome / Metatranscriptome580Y
F002372Metagenome / Metatranscriptome566Y
F002795Metagenome / Metatranscriptome529Y
F004024Metagenome / Metatranscriptome456N

Sequences

Protein IDFamilyRBSSequence
Ga0308390_100473810F000642AGGVQEISIALALCAVGAAVWYMRRRDAGAGRVRGWLLLYDDVGGWRVLSAVYGDAGIVADGVTYPASLPALRAGRELVWVARCESAALIEHQALERARESAALASLWKGGGQWLDLLRVMGVVLPAVFAYFTWAQVSALQGLVAQILALVGDK
Ga0308390_100473811F001381GAGMQYVIAVLYVLVWLALAALAALVLPRWALPVALVQLAIAYVVVRSSLLGAVDADDER
Ga0308390_100473812F000855GAGGMEWLEDFFSKIVGWLDQVSAGVHNGIISWVNSLIDVWNGWMDSLLHPAQAMPSIPALRWIVDWLSNLVDYTRLMYMLVDYVAYAQIVQQALAAQLTIVAVGLGFRAWLVIRRVVLVS
Ga0308390_10047383F002372AGGAGMPTRREDALWPVVHRRASHLRALLDGLDGVDMSIAYELHYYPYAIVELLRVRDDAPPLVLRSVYIQANRQWEYHSEFALRVVEAALQLVHEYRADPSLGGAEAVWA
Ga0308390_10047384F002795GGAGGMPVTSGLVLRGMVAAYREFISRKDGKMYRVVTVYGDLVVGEDVLCSVDGYDVFVDSPDYSRGEMVSFPARLQFVRDGSGKPVIKLYVDEGVR
Ga0308390_10047386F002229GGAGGMVTLLTLDGVEEIDYTPSDAEIRASLDDPGLYGMVLGVVTWIRLSSGAGWWTVLFGKRLVVTLAPVGWCWVMDGLGERGYWSPALSAVVADVCVMYGGCVEED
Ga0308390_10047388F004024AGGAVPSERDYLRQPLNDDDMMFLDARATLAAALSRAVVGYSDSRVRALAWLAIATPRLYDRIAPIIESAAIRQSPGASRTLRDALRALSLEEYVRRRDERRSDR
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