NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308390_1005131

Scaffold Ga0308390_1005131


Overview

Basic Information
Taxon OID3300031514 Open in IMG/M
Scaffold IDGa0308390_1005131 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20040719_149
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6586
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060939Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0308390_10051311F060939N/AALRGLSDAQITHVDVLRRFPYASQVPAGRDRGIAVLVHRAVDPVDGTELDAYPMWVPESGIDAARSLWGYPTLVQDYASKAGYNIDNPTPGDGEPVSLDNEYPDDTDDYYLVAIRRNFWHKLLRDARAYNTLSLTLPEVQARRVRLDIRDLFMGVPMREVIERLDRIIELLEGGGGANTDEIEQLLLQIIAALGST
Ga0308390_100513110F060939N/AMWRLRVWFRDISGTVSYTGAWLRSPDETAIFAFVNALRGLSDAQITHVDVLRRFPYASQVPAGRDRGIAVLVHRAVDPVDGTELDAYPMWVPESGIDAARSLWGYPTLVQDYASKAGYNIDNPTPGDGEPVSLDNEYPDDTDDYYLVAIRRNFWHKLLRDARAYNTLSLTLPEVQARRVRLDIRDLFMGVPMREVIERLDRIIELLEGGGGANTDEIEQLLLQIIAALGST

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