NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308390_1006305

Scaffold Ga0308390_1006305


Overview

Basic Information
Taxon OID3300031514 Open in IMG/M
Scaffold IDGa0308390_1006305 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20040719_149
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5638
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002229Metagenome / Metatranscriptome580Y
F002372Metagenome / Metatranscriptome566Y
F002795Metagenome / Metatranscriptome529Y
F015735Metagenome / Metatranscriptome252Y
F054900Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0308390_100630510F002795AGGAGGMATNNGLVLRGMVASYREFVSRANGKLYRVITVYGDLVVAGVVLCQVDGYDVFVDTPGYARGEMVELPARLQFSRDGSGKPIVRLYVDEGVR
Ga0308390_100630511F002229GGAGGMVTLLTLDGVEDVDYVPSDLEIRASLDDSGLYGMVLGGVTWMRLTSGVGWWTVIGGRRVTATLAAVGWCWVADGLGARGYWSPALACVPAEVRSMCGGYVEDEEVGDGDE
Ga0308390_10063055F054900GGAMICRVRANIGAMEYERAMLQLLVYGVTLVMLYVVDAWSR
Ga0308390_10063058F015735GAGGMVVYHYWSVEWHPHDVDPPGGLLRVVCVARRSVSDPWSGPGPFPADVDRAVRFWNLVASGGARDHGVGYEVVWRLSVVADDADGDAPPGGAWSDDSLYRARRRLLRWVVRSQCPMFVDHFAAEHFRSAPGYFGLLEPGA
Ga0308390_10063059F002372AGGGGGMPTRREDMLWQIVHRKSSHLRALLDSLDLVDVGVTYELDFYPYAIVELLRVREHAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVEEYRADPSMGGAEGV
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Institute for Fundamental Biomedical Research
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