NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308390_1007211

Scaffold Ga0308390_1007211


Overview

Basic Information
Taxon OID3300031514 Open in IMG/M
Scaffold IDGa0308390_1007211 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20040719_149
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5072
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004307Metagenome / Metatranscriptome444Y
F005028Metagenome / Metatranscriptome414Y
F008499Metagenome / Metatranscriptome332Y
F018115Metagenome / Metatranscriptome236Y
F032180Metagenome / Metatranscriptome180Y
F085751Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0308390_10072111F085751GGTGGMSDIIAWIIAGGVILALVNSNVADGLLSALDLSDNLKRAVDWARGVRGVPAGVASACFFILAYVFGALAYRYDLVPTWRFIQPIAADVLATGAEWLTLFALFLTLLPTLIELATV
Ga0308390_10072112F032180AGGAMWWKIEPIPHQELEEWTHAVGRFERAAKRDVAVRAAGVFVIYELDGVLGYVAGREAPDGAYLVERWVRKKKGWTLYE
Ga0308390_10072114F005028AGGAGMRDDDLRAAMSFFAERLRGADLSEARLLRWTRHKLRSDAQAVAELMLTVGYRPTYIRYFLRYHVPALNERAAVGETYVDLDAAAEAHLGLCWRLDEDVLTVYSDLHSAAKRLRQPYRDLAAVCLRWGYVHETVVQMLAKELERK
Ga0308390_10072115F018115AGGAGMNDAEERFVRRYAHLAADAPLDRHAARALLRRALADREALAEYLLNSECAPSLLGEFIYRHWNDALSDAARGASLRLASRTLRALDGLEERDRWAVLEWMQRGVVPSTRILCRLCEEIDD
Ga0308390_10072116F008499AGGAMKCRSKSEPRWKRKERDALRALQATFGRVSDPSLARLLTPTGRVGHLTRFGVDGFVGNEPGFAVEVKARKRMLTKPTLDALLQTIDRAARFERIPLFVLVFGDDVPTRTENGARVDREWVMMPRRVLDELVGKERKDE
Ga0308390_10072117F004307AGGAMFKELISNSGNGRERPELNGAYTAIFRGVSQRQRPTFETRNDPEPTLEDVFVFEFEVVDAEFDEPIRVSKWVRKPTRLTHPSKNGKVTNLYRVLAALYGVVQMSDAQLENAEEFVEKEAIGRQYQLTLETKPSGWIEIVHIAPVRARRKEKQIDEVPF
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