NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308390_1015852

Scaffold Ga0308390_1015852


Overview

Basic Information
Taxon OID3300031514 Open in IMG/M
Scaffold IDGa0308390_1015852 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20040719_149
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2713
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005028Metagenome / Metatranscriptome414Y
F008499Metagenome / Metatranscriptome332Y
F018115Metagenome / Metatranscriptome236Y
F025895Metagenome / Metatranscriptome199Y

Sequences

Protein IDFamilyRBSSequence
Ga0308390_10158521F008499N/ASEPRWKRKEREALKALQALFGRVSDPSLARLLTSTGRVGHLTRFGIDGFVGNNPGFAVEVKARRKMLTKPTLDALLQTIDRAARFERIPLFVLVFGDDVPTRTENGARVDREWVMLPRRVLDELVGKERKDE
Ga0308390_10158522F018115AGGAGMNDAEERFVRWYAHLAADAPLDRHAARALLRRALADREALAEYLLNSECAPSLLGEFIYRHWNDALSDAPESAALRLASVVMRARWRIEDEHDRRAAGWWFQLGLVPSTRVLRQLCVGINDA
Ga0308390_10158523F005028GGAMRDDDLRAAMSFFAARLRGAELDETRLLRWTRHKLRNDAQAVAELMLTVGYRPTYIRYFLRYHIPALNESAAVGETYTDPDAATEAHLGLCWRLDEDVLTVYSDLHRAAMRLRQPYRDLAAVCLRWGYVHETVVQMLAKALERK
Ga0308390_10158526F025895GGTGGMTDLIAWIIAGGVILALVNSNVADGLLSALDLSDNLKRAADWAGGVRGVPAGVAAACFFVMAYVFGALAYRYDLVPTWRFMQPIANDVLATGAEWLTLFVVFLTLLPTLIEIAAAKLAQRDVQMLKWMVYFFIFFDIVTDYGEAAALVEVWQRGGLFAPLPGALQGAAVVMAKIGWTFAASFAFEFLAVLLALTALLLAGNIKAPSGGGGR
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