NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308390_1016952

Scaffold Ga0308390_1016952


Overview

Basic Information
Taxon OID3300031514 Open in IMG/M
Scaffold IDGa0308390_1016952 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20040719_149
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2575
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062336Metagenome / Metatranscriptome130N
F064749Metagenome / Metatranscriptome128N
F079733Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0308390_10169521F062336GAGGMSTVDFSIYKATEPVLTFVRCVWINPHPTKRDTPVEHGGIIWDAAEPVECSGKPFTVTYSSGKTQEVCGGRGFVVIPIRMSNPYTIVTSSDPAMLQQVIVPQPLYMRSDNVPDEFRVSSAVTFFFVLRDDPSNTLMSVQLRSHGATLLNRAYVEWVKTVAKLGNQLLRIPLDVRALPVKFGAGETVMVGRNQKSPIAAPVFKALRQYKTADELQSDLVPPERFKALLEMADDDMIKQYPAIPAVKIAPTLDEAYAALGAALKDEQQPKALPAEVKLVRKVIDEGDYF
Ga0308390_10169522F079733GGAGGMNDIIICDKGKVTFANASIWHLQDDNWFSEPRSSAQWRETCEKELQRLCQSQHWIDVWSLPGDVSLPYDKRLTRVGQWCISRIDASYDDGRLRQLVIFTHFDGRVISETPTYMRGADDRLVKLVPGMEEYDDLWGFDDEGWLFYLEDVPRIWNNLYQRRLINAVADELLGLSLTMDWQGRLARLIRRLMSEGNYDDAIQVAACASARFEHEEWPGDNHFAVVRKQMMKVLATNEL
Ga0308390_10169523F064749N/AMDGQWIIQRADDYVLLCDGPKVALTTRSRAYLDDSFWQQFVRDRRLFFWDTDIMLTNLASGLRWFDVTQVATAHRHDNLLIRREAGAFIFDVVQNEIVSTIAMCEWKDGRLCPVPIYSSLKCDVILWEHLIDYWNDTYRQAVYDVYGLHAHGWAYHTLLLVYELFDAGKYDYARETLKSAVARAKMEGDDKLVAKFENLEQQLLAR
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