NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308390_1033453

Scaffold Ga0308390_1033453


Overview

Basic Information
Taxon OID3300031514 Open in IMG/M
Scaffold IDGa0308390_1033453 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20040719_149
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1487
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050068Metagenome / Metatranscriptome145N
F064749Metagenome / Metatranscriptome128N

Sequences

Protein IDFamilyRBSSequence
Ga0308390_10334532F064749GGAMIQRADDYVLLCDGPKVALTTRSRVHLDDSFWQQFVRDRRLFFWDTDIMLTNLASGLRWFDVTQVATAHRHDNLLIRREAGAFIFDVVQNEIVSTIAMCEWKDGRLCPVPIYSSLKCDVILWEHLIDYWNDTYRQAVYDVYGLHAHGWAYHTLLLVYELFDAGKYDYARETLKSAIARAKMEGDNKLVAKFENLEQQLLAR
Ga0308390_10334533F050068N/ADKVAITDGVLEKIILGDDDSFWEHALTLDAYEFSHFCSNTIDEHLRGLDWLTLWGEPDGKFPLFSDRQDGKVFAYKKGRSVFFFADRDYRVLLAHVVRGRFDIDVTDSGRALFWTRLTLNEECWKMLAMKMWMSFDNYMGSTYNPEVRLIELEIRNLMEDQRWESAIALAAFACSEAKLRNDEAMFQFFRAICERVQRFWPVHPKLLDRMAWR
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