NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308390_1037251

Scaffold Ga0308390_1037251


Overview

Basic Information
Taxon OID3300031514 Open in IMG/M
Scaffold IDGa0308390_1037251 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20040719_149
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1366
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F079732Metagenome / Metatranscriptome115N
F091520Metagenome / Metatranscriptome107N
F106198Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0308390_10372511F079732N/AENLCPSGNLFQPRALIATFEDGTKVKYPVGDRSNLVARARELLRNGAICVDYEGEYWTYVPSTLILGISYRSTPLGGFTNDGSKTTGTFNYQSDILGTVVQPFAIESEPAGLVTTAIACLSGIVYGSGFCTSTRSLNIKARRFRGKGLVAGTNRKTYSRDIKMSSPNPTNCGAANAPNYYCLSYIGESIKNLHLLLPES
Ga0308390_10372512F091520N/AVASYVGNYVNDVGIQYRNIVLNTYFYDNGNRISTTYDRDEMYLPTVFKSNTIRLSNERATCQIEYSTLRVAQCYISDNVYYEIPCPFQGGTSEFTAFFTELNNNSMFRLVNLRGESIPYGYYLVLSSITR
Ga0308390_10372513F106198N/AMSNNLSIQEIIRNRHAVKGKQYLMLYDTDFNTQLLIRQRFYFVPGDPDVFTPIPPVIEERLRPLDPELEVPTALPFKPRECTACFDNPQVQQGFSEYKVFVPFRPTDSKLKQSIKEIMQLPN
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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