NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308390_1037699

Scaffold Ga0308390_1037699


Overview

Basic Information
Taxon OID3300031514 Open in IMG/M
Scaffold IDGa0308390_1037699 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20040719_149
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1353
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011548Metagenome / Metatranscriptome289Y
F020180Metagenome / Metatranscriptome225Y
F026891Metagenome / Metatranscriptome196Y

Sequences

Protein IDFamilyRBSSequence
Ga0308390_10376991F026891N/AMTIIAGCAIEIETEDGLLWYAQNGATRTRLALYAADVHIERVDTEVYVARGAVPVWTGEAWSREASVYLYPAEKHELHAVWLNSHCGFTVVPKDAVLWEASSFGGPKNSESKIAVLKTGCYVEEYTYKRATPSEWFAITLDGAVRCLGEKSRVIALALRGDKDAERLAELKGWLSELITGHLEVQDV
Ga0308390_10376992F020180GGAGGMYDAKRWYIARCSCAKPILYQDMDRYPPRCAKCGGHLYTEPRPPHFERLTPTPVVDMGAILRLLGLGVLGLLGYILICIYFIVLGGL
Ga0308390_10376993F011548GGAGGMVVISGVELVQGSLLWAAQRGSERLRLIADAGVQVRRVGERVYVAHALPMPATRTVRLMPAESGSLYHLRIDDRHRFGVTPAGAQLWSDSIGGIYERGYASAQMSIIRPPAYVSIFRKHKLVNQLHYIALLPRGELREMGTKREVLLLAKTGEPLALQLARWLWEDDDFLG
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