NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308396_1013044

Scaffold Ga0308396_1013044


Overview

Basic Information
Taxon OID3300031515 Open in IMG/M
Scaffold IDGa0308396_1013044 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050930_Pe2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2500
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002229Metagenome / Metatranscriptome580Y
F002795Metagenome / Metatranscriptome529Y
F004024Metagenome / Metatranscriptome456N
F008135Metagenome / Metatranscriptome338Y
F059548Metagenome / Metatranscriptome133N

Sequences

Protein IDFamilyRBSSequence
Ga0308396_10130442F004024AGGAMPSERDYLRQPSSLTDDDMMFLDARATLAAALARAVVGYSDSRVRALAWLAVATPRLYDRVAPIVESAAIRQSPGASRTLRDALRALSLEEYVRRRDERRSER
Ga0308396_10130444F002229GGAGGMVTLLTLDGVEEIDYTPSDAEIRASLDDPGLYGMVLGVVTWMRLSSGAGWWTVLFGKRLVVTLAPVGWCWVMDGLGDRGYWSSTLSAVVADVCAVYGGCVEED
Ga0308396_10130445F008135AGGAGGMSIVDDPRTERVLTEAGADIARVLDARQRHAIVLAVDVVWYIVAALPPDEHMTCRDVVRLLRWFRKGFQEREDDDAGNDWVGAAWFDSRVP
Ga0308396_10130446F002795AGGAGMTMPVTTGLVLRGLIAAYREFISRKDGKVYRVVTVYGDLVAGEDVLCSVDGYDVFVDSPDYSRGEMVSFPARLQFARDGSGRPVIRLYVDEGVR
Ga0308396_10130447F059548AGGGGGMPTRREDALWSVVHQRASHLRALLDGLDDVDMSIAYELHYYPYAIVELLRVRE
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