NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308396_1014193

Scaffold Ga0308396_1014193


Overview

Basic Information
Taxon OID3300031515 Open in IMG/M
Scaffold IDGa0308396_1014193 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050930_Pe2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2350
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002229Metagenome / Metatranscriptome580Y
F002372Metagenome / Metatranscriptome566Y
F002795Metagenome / Metatranscriptome529Y
F008135Metagenome / Metatranscriptome338Y
F015735Metagenome / Metatranscriptome252Y
F092113Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0308396_10141932F015735GAGGMVVYHHWSVEWHPRSDPPGGLLRVVCIARRAVSDPFAGPGLFPADVDRAVRFWNLVASGGARGHGAGYEVVWRLSVVADDAGGDAPPDGAWSDDPVYRARRRLLRWIMRSQCPIPALADHFAAEHFRDRPEYFGLPEPGA
Ga0308396_10141933F002372AGGGGGMPTRREDALWSVVHRRASHLRALLDTLDDVDMSIAYELHYYPYAIVELLRVRDDAPPIVLRSAYVSANRQWERHSEFTLRIVEAALQLVHEYRADPSMGGAEGV
Ga0308396_10141934F002795GGAGGMPVTSGLVLRGMVAAYREFTSRKNGRMYRVVTVYGDLVVGEVVLCVVDGYDVFVDSPDYSRGEMVELPARLQFVRDGSGRPVIKLYVDEGVR
Ga0308396_10141935F008135AGGAGGMRAMNDPRTERVLTEAGASIARVLDARQRHAVRLALEVCSYIVAALPPDEDLTFGDVVRVLRWFAKSFGKDDVEADDAGD
Ga0308396_10141936F002229GGAGGMVTLLTFDGVEDVDYVPSDAEIRASLDDSGLYGMVLGGVTWMRLSSGAGWWTVVCNRRVMATPAAIGWCWVADGLGARGYWTSSLACIPAEVRALCGGYVEDEDEED
Ga0308396_10141937F092113N/AGRYRRSGADYAIYRWHEHPYADDVLVERYRFALRLDTWYGIYDTLYGASPGDTLAILPAPAPAPALARRRG
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