 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031516 Open in IMG/M |
| Scaffold ID | Ga0308398_1002653 Open in IMG/M |
| Source Dataset Name | Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20051001_T9 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8407 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (72.73%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming | |||||||
| Coordinates | Lat. (o) | 44.5387 | Long. (o) | -110.798 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F022604 | Metagenome / Metatranscriptome | 213 | N |
| F028964 | Metagenome / Metatranscriptome | 190 | N |
| F038570 | Metagenome / Metatranscriptome | 165 | N |
| F059420 | Metagenome | 134 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0308398_10026532 | F022604 | N/A | MLSAVNAVHAVVSAVPGVVSAYTTVPMSTPTAALPMVLVTPAGENRRQHAHELVRIESLVRVRIVHSPVAQGVTEAQQSALYALADAVMAALMSDVTLGGQVDHVASVDADEPAIYTLAGTDYLSISIVARVVEKI |
| Ga0308398_10026534 | F038570 | AGGAG | MPATHLRRVQLGQQSTFSTPVAATSILRGVKDGSVTINHNDAVVEELGRSVSDLVVFSQRHAEGEIELQTTYEDILYGLFGLFGPVAPSGGARVFSAPVVSYATPQIYTIEYGAPGAEYRVVGGIIREWTLRYEANAGVTESWAFIGSAVQANALTGSLPTRIVTPVLSRHASWFVDNVGTAHGTTQIPGTVIEAELSINTNRHLKMFEGSQPLDWGEGRWEAQLSITAEFNATAKAWVDALLSDRVARNIRVNFVETAGSRELRIDFVGLIAEAPDLFGDRDGNMTVEVTFKALVASPLNNWLQIRTINGVGTLP |
| Ga0308398_10026538 | F059420 | AGGAGG | MEIELSRGGAALTPLHYRRVSGQYSWVLRDFQGDLIDEVEVLTREALGGRTLIAGQQGRARRIVIVLDVQGTNMVNLHAAIGELESHVRWRKGTPLELRVRAQAANPWSVIEVVLEQMTAQFEDDQYRATVTMRFACHSVYWKETIIPPIPASNSTLTGNAFVVNLSTMTFTPITGITETVRNVDYRAESGEWILFCGTQVWRAPLTGGAATIIGSVSGATSIRGCVAHDGSILAVVQGVNQLVRFTYPSSSPTVLGQFNGLVFRIRRFGDQYVSVGEFSQYRNTSGLAGMVTTDINGNILNTFSPLPSSVIFPGGGRIRDVLIKDNVGVAIANRGTSPQQSWLAVWSNQVAPYYVAEGESTWFPFEIDQSSPIDDVTICAESPIHAGRTFNTLCRLRNLSGIVPYAYPTVNIGCVQDGCAAERNPPVPSEPRKVFRLGDDGTAMPIFTANQNSIAIKRSGLIMCICYTGTANVWTPLTVNVDPLLNTSTTAEIVPALDGIDFRVFSFYSKVTTEILGEVIDPQTIGANYEPKYHTLEAVTVLPGTRYKGAFLGSFNLNANKYLFAVDRSVPSFNVRMVRYKHDWR |
| Ga0308398_10026539 | F028964 | AGGA | MIGAEVTLALTSLSGWGTRIGALALSGSFERRAMDVGQCELEISVSSPSYNLSAYGDVVMVMLPDRREYYFITAIERRKTYYLIRGETFLRYLRDYYPDRYAGTSDAQWSGDAARGVLVSLRPIENIPAHFRITASRDLWIIVPDNVPPSVNVSTSFAWASRLESAQEITRLAHAKGFPLVWWFECGRWCEAKNEAGNYRIEPSIALVFGHGLSRNNIFRPRWSGTINFETWIYDRSQPTAGVALGYGLGVDREVSRARSPRGLFNSWMYWEDRIDGRATGTSAAAQAALMRWRPVEAGAGQAYSQATPRLGDQVFMVAGDNHRCAGIAYVVGERYTVAGAQVDSMELGVMQI |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |