NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308392_1000154

Scaffold Ga0308392_1000154


Overview

Basic Information
Taxon OID3300031517 Open in IMG/M
Scaffold IDGa0308392_1000154 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20050624_m2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27369
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (76.92%)
Novel Protein Genes13 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Associated Families13

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022604Metagenome / Metatranscriptome213N
F025421Metagenome / Metatranscriptome201Y
F026171Metagenome / Metatranscriptome199Y
F026459Metagenome / Metatranscriptome197Y
F028964Metagenome / Metatranscriptome190N
F029920Metagenome187Y
F029994Metagenome / Metatranscriptome186Y
F031690Metagenome / Metatranscriptome182Y
F038570Metagenome / Metatranscriptome165N
F040491Metagenome / Metatranscriptome161N
F042758Metagenome / Metatranscriptome157N
F059420Metagenome134Y
F061432Metagenome / Metatranscriptome131N

Sequences

Protein IDFamilyRBSSequence
Ga0308392_100015412F031690AGGAGMNHNHYPQNLLYCASFDAVVGTERRRLYLLASNAEQAAKYMWPTKTQKRTRYVVSRERLAGLQYADEIEATAHRYGFADNHPHICDVMEAHKSLASVIIETNALRWALSFLPDDGVKTVGIGDKGLIIQGVPLGGIALYSAEILVRSRPLRLVFEQMPRDETAHVDILGHRNARALKISLGTETHYVFDYRNGFTAFIGGER
Ga0308392_100015413F029920GAGMISANALERAFQTERPLKGFVVPSLALSYQPREYLAIGRADRPPDDDDIALVITLAREAFIFLASEPQHEVIKLNGITWHLARWSLKREYVADHLPQIKMERRDR
Ga0308392_100015418F026459AGGAGGMNSQKVQMLRSFNQIESTIRPPVNSLSMFIAALTAMGSGETVQRALYLVERRAPEDVIKDAEQLIDVLYEIGEGVIAMKLQRRLAELREGQSSDAIAGLWEIVDLLPHDAYMSFGFATECAQARCGEHPNPQELLLDMDFDREGFRFGPAWEFWGERAPEAMKVARAAFIANLLYAAGLGDEPDYPEPLAD
Ga0308392_100015420F026171GGAGMSRELKTLRAAVKSARLADLPIAQALKALADMPEARAFKLSPDVLRRMLLESLPEQYATFLFDQAGYRVEMSLADLAYFAKHDEILVELVVSIILYLDKE
Ga0308392_100015423F061432AGTAGGMNSERIDLLERGDSFAPATARVSWFGSVNVPSNSNVTLAIAGLSEVSGNIFEYVSAAQALRIKQAGVIGFLVNVVCNATGVGNLSVLMRQASPLHEWGLAVQPYYLHAGFSFATGGARLVNVPSGGASYQIYVVNSGGTGSFTLQTVDVRLVYLGRR
Ga0308392_100015424F028964N/AMIGAEVTLALTSLRQPGTRTGAIALSGSFERRAMDVAECELEIHALAPIYDLSAYGDVLLVMLPDRREYYFVTAIERRNTYYVLRGETFLRYLRDYYPERYAGTSDAQWNGDAAAGVLRSLRPIEYVPVHSFALSFRDLWIITPDNVPPSVNVSTSFAWASRLEAAQEITRLAHAQGFPLVWWFECGRWCAAKDATGNYGVEPSVALVFAHGLPRNGLFRPRWGGSIKYEAWVYDRSQPTAGVALGYGHGEDRDVTRARAARGLFNGWTYWEGRLDGRATGTSAAAQAALMRWRPFEAGSGQAYSQAMPRLGDQVFLVAGDHQRCAGIAHVVSERYVITGGQVSSAEVGVMQI
Ga0308392_100015425F059420AGGAGMEIELFRGTSTLTTLHYRNVPGQYSWVLRDLQGDLMDEIEVLTRDALGGRTLAVGQQGRARRIAVVLDVQGTSMPNLHAAIRELETHTRWRKGTPLELRVRAQAANPWSAIEVVLEQISAQFEDDQYRATVTMRFACRSVYWREGIGVFPSSNSTLNGRVFVVDLSTMTFAPITGIADVIFNIDYREASNEWIIFTTTQVWRAPATGGAAALVGSVTGSTQLRGCVTHDGNILAVAQGVNFLVRFTYPSSGPTGLGTFNGVPVRVRRFGNSYVSVGEFSQFQTTGGLAGMVTTDVNGNITNSFSPFPTSVIFPGGGRIRDVLIQDNIGVAIAYRAPSPSQSWVAVWSGQVAPYFVAEGASSWGPLEIDQSSAIDDVTICAESWIHAGRTFNTLCRLRNLGGIVPYAYPTVTVGGVQDGCAVERFTFTTSEPRKVFRLGVDGTAMPLFTASANSFAVRRVNNLMCIGYIATANVWTPLTVDVGSIANTGATAEIVPRLGGLAVPVFSCYSKVDTEILGEVLDPQTQAANYEPKYHGGGVVTPLPGTKYERMFRGSMNEGVTRYWFAVGGSVASNNVTLNRYKHDWR
Ga0308392_100015428F025421N/AMIDLSKVRRIDRNAPGSFMEYARLQTIITEGDLMAIARALESYGVNLQELSFNELTDVIKHIAGEPTPLGDTSATA
Ga0308392_100015429F038570AGGAGMPATHLRRVQLGQQTTFSTPVAATSILRGVTDGSVTVNHNDAVVEELGRSVSDLVVVSQRHAEGEIELQTTYEDILYGLFGLFGPVAPSGGARTFNAPVVNYAAPQIYTMEYGTTGAEYRVVGSIIREWTLRYEANAGVTESWSFIGRSVQANALTGSLPTRVVTPVLSRHASWFVDPTGTAHGTTPVPGTVIEAELSINTNRHLKMFEGAQPLDWGEGRWEAQLTITAEFNTTAKAWVDALITNRVARNIRAEFVETANTRELRVDFVGLLAEPVELFGDRDGNMTVELTFKALVAGPLNNWLQIRTINGIATLP
Ga0308392_10001543F040491AGGMDIVQVQTFLRYIAELPEVQFIAASVLVNTALAVAASIRNDDFHLPALANFLWRHLLPYVVAYVSIRIAADELGLQAVATATWLIIEASLLGRIAASLHELGIPMPDSLAKLLRKDH
Ga0308392_100015431F022604GAGGVLSAVNAVHAVVATVTGITAAYTTVPMSANTPALPMALVTPLSENRRQHAHELVRIETLVRVRIVHSPIAQGITASQQSALYTLADDVMTKITDDITLGGQVDHVASVDADEPSIYTLAGTDYLSISIAVRVVEKI
Ga0308392_100015433F042758AGGAGGMKPTDFLNIAGRLPAQAITGATETTSVDMQLLRGVAAVCIVGTASTPPSFKIQSSADNSTFADLTGKSITSVAANSEGIINVRDEDLPDGHRWIRAAVNGNATVAVVFIGTSARNNPPAKLASTTIVD
Ga0308392_10001548F029994GGAGGMPVSFPGYRQDIPVVHGRPLLFVRCRRCGYTTVARSPGAATLRGWQLPERWPYHVPQLGATVEGVCYSCVSKARRLPGRRGL
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