NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308392_1001297

Scaffold Ga0308392_1001297


Overview

Basic Information
Taxon OID3300031517 Open in IMG/M
Scaffold IDGa0308392_1001297 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20050624_m2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10117
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (93.33%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004307Metagenome / Metatranscriptome444Y
F005028Metagenome / Metatranscriptome414Y
F006252Metagenome / Metatranscriptome377Y
F018115Metagenome / Metatranscriptome236Y
F019420Metagenome / Metatranscriptome229Y
F032180Metagenome / Metatranscriptome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0308392_100129710F019420AGGGGGMATYRDVTFWSGATDGDREAAVIRARLLGMVIELGDDDERPDKMTAFYAADGGGIIVYEVDCFEADGRMTARWQRVASLEDVRRRYAAYLERLEL
Ga0308392_10012972F032180AGGAMWWKIEEIPHQELEDWTKAVGRFERVAKRDVVVRAAGAFVIYDLNGVLGYVAGREAPDGAYLVERWVRGKRGWTLYE
Ga0308392_10012973F005028AGGGGGMRDDDLHAAMSFFAERLRGVDGDETRLLRWTRHKLRNDAQAVAALMLHVGYRPTYIRYFLRYHIPTLNESAAVGETYTDPDAATDAHLGLCWRLDEDVLTVYTDLHRAAKRLRQPYRDLAAVCLRWGYVHETVVQMLAKTLERKAKDVVED
Ga0308392_10012974F018115AGGAGMNDAEERFVRWYAHLAADAPLDRHAARALLRRALADREALAEYLLEHECAPSLLGEFIFRHWNDALSDAARGASLRLASRTLRALDYLEERDRWATLEWLKRGVVPSARILRRLCEGVNNAR
Ga0308392_10012976F004307AGGAMFKELIHNGNGRERPQLNGAYIGRFVGVKERQRPTFETRLSPEPTYEDVFVFEFEVEDDDGNPLRVSKWVRKPARLTHPGKSGKVTNLYRVLAALYGVSVMTDAQLERAEEFVQEAVGREYQLTIETKPSGWCEIVHIAPVRKARNRKKEEDEEVPF
Ga0308392_10012979F006252GAGMKSFDEQAAYGLPYERLIAQTAALLLYPHRLDLTLVRLDAYAPLDYLLLDGDCPVAALEVKRRSVRSDAYPTTIIPQSVVDAARRLTIPVYAAILFTDGLAVFDVLRTPSTVRWLRTRRGALRKHREYDISERLVKVEEVHQRQRRSA
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