NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308392_1001539

Scaffold Ga0308392_1001539


Overview

Basic Information
Taxon OID3300031517 Open in IMG/M
Scaffold IDGa0308392_1001539 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20050624_m2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9208
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002970Metagenome / Metatranscriptome517N
F004791Metagenome / Metatranscriptome423Y
F005302Metagenome / Metatranscriptome405Y
F005631Metagenome / Metatranscriptome394N
F010840Metagenome / Metatranscriptome298Y
F016404Metagenome / Metatranscriptome247N
F105262Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0308392_10015391F010840AGGAGGVNLPFSQPLDKVTFGALAAATIIVLTWALREFVGIELPAEVQAALAVIFGYVVSYHIPLTEAEAEAIARKYYRNYK
Ga0308392_100153910F002970GGAGMSYNTVVDVIELLAGLAVQYNSAVVPVRRLSTQPNWSDAAQLPVRIIPTLGGLRLVEGGVYTPTRATRAVWEVDDLLLVRDVGMGRGVADTAAALADYIEDYVARLRFAWLPRGDVQLLNVSGIIDVIRYGERAYEGVAMTTRFAHLIRAPSG
Ga0308392_100153911F005302AGGAGGMSHSGVIAGLYAGTFAVEISTDATTWTAVSNATVKIDDVELSRPSGEAYVGGSSDYATVTIGKQEPVELTLTFLYSEASGSAANTIVDRFRSATPTLGVRWSPRGLVGSARAYGTSNDGGTSFGLGVITGVTLSALDPSDAEPYVAMVTVRTPSLRQYTLGSSPTNLNPAS
Ga0308392_100153912F004791AGGAGGMGKPAEIYDIDTIRVDRNALTIREAASVLNNELTAPVVARLVRKAIGTQADRFPLRALKRVYERVLPQIFEPDAAIRARVEGLTPAVGEITLGEYHEFLDASERKIAFPPVATTLLIKAYGEDILNEPYAAAALLLKKIFDSIGDEGNE
Ga0308392_10015392F016404N/AMTIDELLTDEARAAVLRALFMIVVNDNEPASARVAAARLFLSQFEEHSNAERDVLVIVDEAAFVKTV
Ga0308392_10015395F005631GGAGMRVSVSVDLDNALRKLLPRAPQIEAALDAGATAAHGMMQIYPPPPAGSRYRRTGNLRQKLRIKKPSKTSRIVENTASYARYVYGMPQARVHRGRWASVRDAAEAAKKEAIAALKGR
Ga0308392_10015398F105262AGGAGGMLVQETVQPLLRYFNAAASGADTAVVGISNAQAVRIVAHTGAVTGSASLQVHVNDTNNTNNSAQLTDKTIASLASNRTYEIFVTGAEAYAAKTHASHMFVRIAGTGTAQIAIEISAFPARDVPATLPTDWTRVL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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