NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308392_1002072

Scaffold Ga0308392_1002072


Overview

Basic Information
Taxon OID3300031517 Open in IMG/M
Scaffold IDGa0308392_1002072 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20050624_m2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7711
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005631Metagenome / Metatranscriptome394N
F006418Metagenome / Metatranscriptome373Y
F010840Metagenome / Metatranscriptome298Y
F016404Metagenome / Metatranscriptome247N
F051735Metagenome / Metatranscriptome143N

Sequences

Protein IDFamilyRBSSequence
Ga0308392_10020721F006418AGAAGGMSKRRSASKPHPEREIIIEEGSDYRILFDRETRDFAVEYRGQPVGWRPNEAEARRLVEALRYEDARRGE
Ga0308392_10020722F051735GGAGGMFRDVTIINGPVPKDVVADYERVRIKARPLGRPYAWDNGRAWNPYTTNGGFLLVFECEDGAVYIQEIEWEVDPYPAADPSPRTYYYYERYDSLDEARAGGRGWLIEYALGNE
Ga0308392_10020723F010840AGGAGGVNLPFSQPLDKITFGALAAATVIILTWALREFAGIDLPAEVQSALALIIGYVVSYHIPLSETEAEAIARKYYKYK
Ga0308392_10020724F016404N/AMTVDELLTDEARAAVLRALLMIVLNESDPASARVAAARLFLSQFDEQPNAERDVLVIVDEAAFVKTV
Ga0308392_10020727F005631GGAGMRVSVAVDLDNALRKLLPRAAQIEAALDAGATAAHGMMQIYPPPPAGSRYRRTGNLRQKLRIKKPSKTSRIVENTASYARYVYGMPQARVHRGRWASVRDAAEAAKKEAIAVLKGR
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