NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308392_1002223

Scaffold Ga0308392_1002223


Overview

Basic Information
Taxon OID3300031517 Open in IMG/M
Scaffold IDGa0308392_1002223 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20050624_m2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7421
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006252Metagenome / Metatranscriptome377Y
F014738Metagenome / Metatranscriptome260Y
F019420Metagenome / Metatranscriptome229Y
F072382Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0308392_10022232F014738GAGGMKLDVLLLIGAFALAFVHPDAAQVAASAVLVLLTVRIERGRRARKKKSAPVVH
Ga0308392_10022233F072382AGGAGGMKTVYHTKDVWFPPFSIKIEPERGTWFADVYVRCTNAPNDKYNAYIGANDFLAGTPIPARYRRDLAKAIESLVFDYGLVDLVIYPAREGWGVHITLCPELENQYLHGTGETPADAIRNSNYPPPLRNV
Ga0308392_10022237F019420AGGGGGMKTYRDVIFWSGATDGDCEATVIRARLLEMIIELGEGEQPDVMTAWYEAEDGGSIVYEVECWEADGRMTARWRRVASLEDARYETV
Ga0308392_10022238F006252GAGGMRPFDEQAAFGLPYERVIAQTAALLLYPQRLDLTLVRLDAYAPLDFLIVDDGRPIAALEVKRRSIRSDTYPTTIIPQSVVDAARRLTIPTYAAILFLDGLAVFDVLRTPSTVRWLRTRRGALRKHREYDISERLVKVEEVHQRQRRIA
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Institute for Fundamental Biomedical Research
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