NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0308392_1002599

Scaffold Ga0308392_1002599


Overview

Basic Information
Taxon OID3300031517 Open in IMG/M
Scaffold IDGa0308392_1002599 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20050624_m2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6774
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (75.00%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002982Metagenome / Metatranscriptome515Y
F006418Metagenome / Metatranscriptome373Y
F007976Metagenome / Metatranscriptome341Y
F010840Metagenome / Metatranscriptome298Y
F016404Metagenome / Metatranscriptome247N
F044842Metagenome / Metatranscriptome153Y
F048124Metagenome / Metatranscriptome148Y
F075805Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0308392_100259914F010840AGGAGGVNLPFSQPLDKITFGALAAATVIILTWALREFAGIDLPAEVQSALAVIFGYVVSYHIPLSETEAEAIARKYYKHK
Ga0308392_100259915F016404N/AMTVDELLTDEARAAVLRALFMIVVNDNEPASARVAAARLFLSQFEEQPNADQSVLVIVDEAAFVKTV
Ga0308392_10025992F044842AGGAGGVEEIELWCGVRGNTFRSTQCVRFIGEYLGMVTVTHADDWVERCVLYRTEDGRVAVHQLRLSLLEDGVDVAEAYVLPALDAGEGAKEQR
Ga0308392_10025994F048124AGGAMATISIWRGYRDWDAGSDYEIVTYEDACELGAVRFEDADSDIQYRIIEWDEGIVVFFVKREGYYCEAEIYEYPSLEEAAKEYRFVLKKAGVI
Ga0308392_10025995F075805AGGAGGMRIQVWHGWRGVHNGVDVSRFEWLEFDGEPLGSLVVETDEDRTDERVFYRLSDGRIVVAEHRYGDWEAGGVDYGVVSVYADIDDAARRGWRDDLVRVGAYGAPTRELDEWLSQYEE
Ga0308392_10025996F002982GAGGMKIAFERTPTAICAVLTTGECDRIITVARPSDAIDALALGIDAAAFTSLDALLALPRVVLVEIERCEGGWRVEVAYWNKGLGTLAQYETDAATLSEVLARCVWALAR
Ga0308392_10025997F007976AGGAMPSSELAHFLNVALDIQATPYPGIHVADGVAAATDGVMLVVKKFDDKVFLRGEGAISPKAAKVLTALAEATWIGSVAVVGNRVTVTAQTTRYDEKLGVEVAGEYCEVKLPEFYCRQIPIRRMLGALTDESRGWQQIVENPRIKNVKEWSGKEFVALMNNPREGYELFRLKDTDDAQWYSVAQLRRGLRLFGAKACLSVRRSNNGWLAFEDKYGHTFAVTPFVKHD
Ga0308392_10025999F006418AGGAGMPKRRSAPAPRPVREIVIDSGDDFKIIFDRESKDYAVEYRGQPVGWRASESEARRLVEALRHEDARRGE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.