NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308392_1004472

Scaffold Ga0308392_1004472


Overview

Basic Information
Taxon OID3300031517 Open in IMG/M
Scaffold IDGa0308392_1004472 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20050624_m2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4870
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005028Metagenome / Metatranscriptome414Y
F032180Metagenome / Metatranscriptome180Y
F044842Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0308392_10044722F005028AGGAGMRDDDLRNDDLRAAMSFFAERLRGAEAGEARLRRWTRHKLRTDAQAVAALMLHVGYRPTFIRYFLRYHIPEINENAAVGETYADPDAADAHLGLCWRLDEDVLTVYSDLHAAAKRLRQPYRDLAAVCLKWGYVHETVVQMLAKALERKPRNVVEG
Ga0308392_10044723F032180GGAGLENWANEVGRFERAAKRDVAVRAAGAFVIYSSPDGALGYVAGREAPDGAYLVERWVRGKRGWTLYE
Ga0308392_10044726F044842AGGAGGVEEIELWCGVRGNTFRSTQKVCFVGEFLGVVEVARADDRIERCVLYRTEDGRVAVHQMRLSLLDDGVDVAEVYVLPALDAGEGERGGRV
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