NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308392_1005420

Scaffold Ga0308392_1005420


Overview

Basic Information
Taxon OID3300031517 Open in IMG/M
Scaffold IDGa0308392_1005420 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20050624_m2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4305
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028051Metagenome / Metatranscriptome193Y
F087843Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0308392_10054204F087843AGGMHTGRAYTNVYDVGTDWQLIAGYSEYRSFLLISVQEGEGCYLYFGSEPASQPTLPVQGVRLNANAPYIAFTYPPVQLTYGPVWARCHGSPYEDSARVSVIEVSHPPECRGHIH
Ga0308392_10054205F028051AGGAGGLDSSGRSRVWDIRAPNTLTADRQQLTAAEVLRLIRGLPQQRPSQVSLARRYNVEFRTVEISGPPGRYVVLRSDPRRFAFYLWGSGFGTYYFSPYEFDDSGAGPFTATSTVPLRITEESHPGLPRLEWRYLHSAGGSVRFYLIEVIDTAV
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