NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308392_1008270

Scaffold Ga0308392_1008270


Overview

Basic Information
Taxon OID3300031517 Open in IMG/M
Scaffold IDGa0308392_1008270 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20050624_m2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3302
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002982Metagenome / Metatranscriptome515Y
F007976Metagenome / Metatranscriptome341Y
F031016Metagenome / Metatranscriptome183Y
F043176Metagenome / Metatranscriptome156Y
F075805Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0308392_10082701F031016GGAGGMDTIRIWSGSRRVVCGEDYEFVKYEEFEGETLGACWEEENSRGTQTTFYRTHDGRIVVHVVRWSRWENEATYAYIHVFPALEGVNGAAAMFQWELENAGIIPPRTVELGE
Ga0308392_10082702F075805AGGAGGMSVRVWHGWRGVHGNKDVSQFVWLEFDGELLGSLVVEVDEDRTDERVFYRLSDGRLVVAEHRYGDWEAGGVDYGVVSVYADIDDAARRGWRDDLVRVGAYDAPTLELDEWLSRYEEEE
Ga0308392_10082703F002982GAGGMKIAFERTPTAICAVLTDAGECDRIITVARPSDAIDALALDIHTAAYKPLDALFALSRVVCVEIERREGGWRVEVAYWNKGLGTLAQYETDATTLSEALARCVWALAS
Ga0308392_10082705F007976AGGAMPSNKLAHFLNVALDIQVTPYPGIHVADGVMAATDGVMLVVADWGLEFLRGEGAISPRTAAVLAAMAEVAYVGGIEVDGNRVTALVQSTRYDEKAGGEVAGEYCEVKLPEFYCRQIPIRRMLAVLTDESRGWQQIVENPRIKNVKEWSGKEFVALMSNPREGYELFRLKDTDDAQWYSVAQLRRGLRLFGAKARLSVRRSNNGWLAFEDGYGRTFAVTPFVKHD
Ga0308392_10082707F043176AGGAGGMQTYRVWEGTRTWLPGDTSEYTETEILADELGWFEDVNPDGYSGTAYYVYRTESGEIIINVVNKNYGIGEPSRAVIYRFSSLEEAAQSEQRYALSELRLI
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