NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0308392_1011272

Scaffold Ga0308392_1011272


Overview

Basic Information
Taxon OID3300031517 Open in IMG/M
Scaffold IDGa0308392_1011272 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20050624_m2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2694
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007033Metagenome / Metatranscriptome359Y
F024322Metagenome / Metatranscriptome206N
F044249Metagenome / Metatranscriptome154N
F068874Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0308392_10112721F044249N/AKKYVMVLAALIVLGSLANFLGWVHAIVSGEGCKAVKVLQGTARLVFYIVFYVALLVGLEQVASYLIPPLLSVAIIYEASLALKKAVQLNIIPAGLVRQLTKVFRHEPPEKAP
Ga0308392_10112722F024322N/AMSLLRKLRNARQRRYLRLVDPVLQQFEFCPVWANYLTPPSPVQVDTSVGTLTIQTGLIRAFAREYDVSAYAFPFSTEERVAFHPPPIFVAHYNEFSQIAVRQKDAFLAVIPDARMGKSEWGEVEHEAFFFAPALDTEEFEVQLDRIDGVRESLMELWPKMVAITEIVPKFSRRAEWGTGEKLVKGEWIAIRLTINLKDYELNAV
Ga0308392_10112723F007033GAGMQCRCSQPLWALGIPDCHPVLRPIRRVVFETVLNSSSAPVDFDLPNSSLYPNARRLMTPILYNVESERPEAVFEELSGTKFFVRHQPRTFKALVAKPPTEWGINIEQLRCVSRLGVFLIDDAGVVWGRRVSPGEAAPIPIEPGTVQARLLFPSDATITKYEFSFDFAQSLMDFELVPVFAAAGLLNYTPRVATRIFVSFVGSGVSAIVYALYARGAGDLYIPITGLAPYLEIRNNANTLITTNFTEVEAGVYQDSSLSLSPSGNPYTIRVGAGAPTGAFDYTTAVAQFNV
Ga0308392_10112724F068874N/AVFGLLRRVLRFYERVELPDVPAQPQSLSHGGRTIVRYPPSPAWAVREPLWLGRRGLGVYAPSTAKMKRKLGLPDREIVLFQTGQLYASIQVLNMKKYYLVRVQRDKLFYIIRRFPVERWLRVDASAVRAGLHKALLAALLGCAPLKKAKSVQSMEVAVRREEVVAHETLRLTTLLNDTIYLRNERLVIHYDTIRQMLRIEQVRPVVLVRDSVVRQNIVLQAPAWVAEERAEKRLSWWKRWGQGAFALMVGLSLLGFIGYLWLRALRIG
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.