NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308392_1012337

Scaffold Ga0308392_1012337


Overview

Basic Information
Taxon OID3300031517 Open in IMG/M
Scaffold IDGa0308392_1012337 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20050624_m2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2536
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007033Metagenome / Metatranscriptome359Y
F024322Metagenome / Metatranscriptome206N
F044249Metagenome / Metatranscriptome154N
F068874Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0308392_10123371F044249N/AMTKRDAILALLGGALTIVAKKYVPVLAALIVLGSLANFLGWVHAIVSGEGIKAVKVLQGTARLVFYMVFYVALLVALEQVASYLIPPLLSVAILYEASLALKKAVQLNIIPAGLVRQLTKIFRHEPPKKAP
Ga0308392_10123372F024322N/AMSLLRKLRNARQWRYLRLVDPVLQQFEFCPVWANYLTPPSPVQVDTSGGTLTIQTGLVRAFVREYDVSTYAFPFSAEERVAFHPPQIFVAHYNEFSQIAVRQQDAFLAVIPDARIGKSEWGEVEHEAFFFAPALDTEEFEVQLERIAGVRESLMELWPKMVSITEIVPKFSRRAEWGTGEKLVKGEWIAIRLTINIKNYELNAV
Ga0308392_10123373F007033GAGMQCRCGAPLWALGIPDCHPVLRPIRRIAFETVLELSGTPTNFDLINSTVYPNARRLMTPILYNVESERPEAVFEELSGTKFFVRHQPRTFKALVAKPPAEWGINIEQLRCVSRLGVFLIDDAGVVWGKRVSPLAAAPIPIEPGTVQARLLFPSDATITKYEFSFDFAQSLMDFELVPVFADAGLLNHVPGIAARLDPSWNAPTLSVGVYALYARGAGDWYIPITGLAAYLELRNNANTLITTNFTEVAPGVYQDSSLSLPPSGNPYTIRVGSSAPPRPFDYTTAVAQFTV
Ga0308392_10123374F068874N/AVFGRLRRVLRFYERVELPDVPAQAQSLSYGGRTIVRYPPSPAWAVREPLWLGRRGLGVYAPSTAKMKRKLGLPDREIVLFQTGQLYASIQVLNMKKYYLVRVQRDKLFYIIRRFPVERWLRVDASAVRGGLRKALLAALLGCAPLKKTKSVQSVEVAVRREEVVAQETLRLTTLLNDTIHLRNERLVIHYDTIRQMLRIEQVRPVVVVRDSVVRWNAVVQAPAWVAEE
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