NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0308392_1014998

Scaffold Ga0308392_1014998


Overview

Basic Information
Taxon OID3300031517 Open in IMG/M
Scaffold IDGa0308392_1014998 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20050624_m2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2229
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002982Metagenome / Metatranscriptome515Y
F007976Metagenome / Metatranscriptome341Y
F048124Metagenome / Metatranscriptome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0308392_10149981F007976AGGAMPGTELSSFLRVALDVQAPPFSGIHVADGVILATDGVMLVAKKFDDLVFLRGEGAISPKAAKVLEALAEATWIGSIAVVGNRVTATARSTRYEEKAGGEVAGEYCEVTLPEFYCPRVPVKRMLGVLHDESRGWQQIVENPQLKTLKEVNAKNYVALIDTPSNGEELFRPKVDGDALYYSVAQLRRGLKLFGARARLSVRRSNNGWLVFEDGYGHTFAVTPFVKHN
Ga0308392_10149983F002982GGAGGMKIQFERHPHAICAVLTDAGGCDRIISVDRASDAVDALALGINAAAFTPLDALVSLPCVVCVEIERREGGWLVEVAYRNKGLGALAQYETDAATLSEALARCVRALAR
Ga0308392_10149984F048124AGGAGGMATISIWRGYRDWDAGSDYEIVTYEDAEEIGAVRFEDEEADIQYRIIKWDEGIVVFFVKREGYYCEAEIYEYPDLEAAAKDYAFILRKAGVIQ
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.