NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308392_1049113

Scaffold Ga0308392_1049113


Overview

Basic Information
Taxon OID3300031517 Open in IMG/M
Scaffold IDGa0308392_1049113 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20050624_m2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)978
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002229Metagenome / Metatranscriptome580Y
F063723Metagenome / Metatranscriptome129N
F080999Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0308392_10491131F063723N/AVSLDSREWASEAARCLTRDMILWGKRGVICVYTSPSFQTVDVRLRRLTQYVYVTAGRFRRSGVDYAVYRWHEHPYADDVLVERYRFALRLDAWYGIYDTLYGASPGDTLAILPASAPAPALARRRG
Ga0308392_10491132F002229GGAGGMVTLLTLDGVEDVDYTPSDAEIRASLDDAGLYGMVLNGVTWMRLVSGAGWWTVVCNRRVTATLAAVGWCWVADGCDARGYWSPALACVPAEVRALCGDGCADDEDEEGGDGDD
Ga0308392_10491133F080999AGGAGGMATTNGLVLRGMVASYREFTSRKNGKTYRIVTVYGDLVAGEIVLCAVDGYDVFVDSPDYSRGEIVE
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