NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308389_1005357

Scaffold Ga0308389_1005357


Overview

Basic Information
Taxon OID3300031518 Open in IMG/M
Scaffold IDGa0308389_1005357 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20040719_148
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6693
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002372Metagenome / Metatranscriptome566Y
F002795Metagenome / Metatranscriptome529Y
F009403Metagenome / Metatranscriptome318Y
F074921Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0308389_10053571F074921N/AAGRELVWVARCESAALIEHQALERARESAALASLWRGGGQWLDLLRVAGVVLPAVFAYFTWAQVSALQSLVAQILALVGDK
Ga0308389_100535712F009403AGGVFRITRRGRGSGRAPALSVVRSADGARLEVREGRYGQGALYAYCDVDDTLAAHTLLLTFADMRARVIYIHDSLPLISERKFLDAFSGLRSGFPHSDSLPDADSLPDADADSGA
Ga0308389_10053576F002795AGGAGGMATNDGLVLRGMIAAYREFISRKDGKTYRVVTVYGDLVAGEDVLCSVDGYDVFVDSSDYSRGEMVTFPARLQFARDAGRPVIRLYVDEGVR
Ga0308389_10053577F002372AGGGGGMPTRREDALWSVVHQRASHLRALLDGLDDVDISIAYELHYYPYAIVELLRVREDAPPLVLRSAYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSLGGAEAVWA
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